"""
|
Numba 1D mean kernels that can be shared by
|
* Dataframe / Series
|
* groupby
|
* rolling / expanding
|
|
Mirrors pandas/_libs/window/aggregation.pyx
|
"""
|
from __future__ import annotations
|
|
from typing import TYPE_CHECKING
|
|
import numba
|
import numpy as np
|
|
from pandas.core._numba.kernels.shared import is_monotonic_increasing
|
from pandas.core._numba.kernels.sum_ import grouped_kahan_sum
|
|
if TYPE_CHECKING:
|
from pandas._typing import npt
|
|
|
@numba.jit(nopython=True, nogil=True, parallel=False)
|
def add_mean(
|
val: float,
|
nobs: int,
|
sum_x: float,
|
neg_ct: int,
|
compensation: float,
|
num_consecutive_same_value: int,
|
prev_value: float,
|
) -> tuple[int, float, int, float, int, float]:
|
if not np.isnan(val):
|
nobs += 1
|
y = val - compensation
|
t = sum_x + y
|
compensation = t - sum_x - y
|
sum_x = t
|
if val < 0:
|
neg_ct += 1
|
|
if val == prev_value:
|
num_consecutive_same_value += 1
|
else:
|
num_consecutive_same_value = 1
|
prev_value = val
|
|
return nobs, sum_x, neg_ct, compensation, num_consecutive_same_value, prev_value
|
|
|
@numba.jit(nopython=True, nogil=True, parallel=False)
|
def remove_mean(
|
val: float, nobs: int, sum_x: float, neg_ct: int, compensation: float
|
) -> tuple[int, float, int, float]:
|
if not np.isnan(val):
|
nobs -= 1
|
y = -val - compensation
|
t = sum_x + y
|
compensation = t - sum_x - y
|
sum_x = t
|
if val < 0:
|
neg_ct -= 1
|
return nobs, sum_x, neg_ct, compensation
|
|
|
@numba.jit(nopython=True, nogil=True, parallel=False)
|
def sliding_mean(
|
values: np.ndarray,
|
result_dtype: np.dtype,
|
start: np.ndarray,
|
end: np.ndarray,
|
min_periods: int,
|
) -> tuple[np.ndarray, list[int]]:
|
N = len(start)
|
nobs = 0
|
sum_x = 0.0
|
neg_ct = 0
|
compensation_add = 0.0
|
compensation_remove = 0.0
|
|
is_monotonic_increasing_bounds = is_monotonic_increasing(
|
start
|
) and is_monotonic_increasing(end)
|
|
output = np.empty(N, dtype=result_dtype)
|
|
for i in range(N):
|
s = start[i]
|
e = end[i]
|
if i == 0 or not is_monotonic_increasing_bounds:
|
prev_value = values[s]
|
num_consecutive_same_value = 0
|
|
for j in range(s, e):
|
val = values[j]
|
(
|
nobs,
|
sum_x,
|
neg_ct,
|
compensation_add,
|
num_consecutive_same_value,
|
prev_value,
|
) = add_mean(
|
val,
|
nobs,
|
sum_x,
|
neg_ct,
|
compensation_add,
|
num_consecutive_same_value,
|
prev_value, # pyright: ignore[reportGeneralTypeIssues]
|
)
|
else:
|
for j in range(start[i - 1], s):
|
val = values[j]
|
nobs, sum_x, neg_ct, compensation_remove = remove_mean(
|
val, nobs, sum_x, neg_ct, compensation_remove
|
)
|
|
for j in range(end[i - 1], e):
|
val = values[j]
|
(
|
nobs,
|
sum_x,
|
neg_ct,
|
compensation_add,
|
num_consecutive_same_value,
|
prev_value,
|
) = add_mean(
|
val,
|
nobs,
|
sum_x,
|
neg_ct,
|
compensation_add,
|
num_consecutive_same_value,
|
prev_value, # pyright: ignore[reportGeneralTypeIssues]
|
)
|
|
if nobs >= min_periods and nobs > 0:
|
result = sum_x / nobs
|
if num_consecutive_same_value >= nobs:
|
result = prev_value
|
elif neg_ct == 0 and result < 0:
|
result = 0
|
elif neg_ct == nobs and result > 0:
|
result = 0
|
else:
|
result = np.nan
|
|
output[i] = result
|
|
if not is_monotonic_increasing_bounds:
|
nobs = 0
|
sum_x = 0.0
|
neg_ct = 0
|
compensation_remove = 0.0
|
|
# na_position is empty list since float64 can already hold nans
|
# Do list comprehension, since numba cannot figure out that na_pos is
|
# empty list of ints on its own
|
na_pos = [0 for i in range(0)]
|
return output, na_pos
|
|
|
@numba.jit(nopython=True, nogil=True, parallel=False)
|
def grouped_mean(
|
values: np.ndarray,
|
result_dtype: np.dtype,
|
labels: npt.NDArray[np.intp],
|
ngroups: int,
|
min_periods: int,
|
) -> tuple[np.ndarray, list[int]]:
|
output, nobs_arr, comp_arr, consecutive_counts, prev_vals = grouped_kahan_sum(
|
values, result_dtype, labels, ngroups
|
)
|
|
# Post-processing, replace sums that don't satisfy min_periods
|
for lab in range(ngroups):
|
nobs = nobs_arr[lab]
|
num_consecutive_same_value = consecutive_counts[lab]
|
prev_value = prev_vals[lab]
|
sum_x = output[lab]
|
if nobs >= min_periods:
|
if num_consecutive_same_value >= nobs:
|
result = prev_value * nobs
|
else:
|
result = sum_x
|
else:
|
result = np.nan
|
result /= nobs
|
output[lab] = result
|
|
# na_position is empty list since float64 can already hold nans
|
# Do list comprehension, since numba cannot figure out that na_pos is
|
# empty list of ints on its own
|
na_pos = [0 for i in range(0)]
|
return output, na_pos
|